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Table 2 Parameters for clustering algorithms

From: Supervised maximum-likelihood weighting of composite protein networks for complex prediction

Clustering algorithm Parameter settings
CMC min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.25
  min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.5
  min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.75
HACO -c c 1 -g 0.1
  -c c 1 -g 0.3
  c c 0.75 -g 0.1
MCL -I 2
  -I 3
  -I 4
ClusterONE -s 4 -d 0
IPCA -S4 -P2 -T0.4
RNSC -e10 -D50 -d10 -t20 -T3