Skip to main content

Table 4 Summary of overlapping gene pair proportions.

From: IntPath--an integrated pathway gene relationship database for model organisms and important pathogens

H. sapiens

KEGG vs WikiPathways

WikiPathways vs HumanCyc

HumanCyc vs KEGG

Overlap Gene Pairs

1198

468

1,270

Unique Gene Pairs

45,205

23,060

32,987

Jaccard Coefficient

0.026

0.020

0.037

M . m usculus

KEGG vs WikiPathways

WikiPathways vs MouseCyc

MouseCyc vs KEGG

Overlap Gene Pairs

875

1,242

2,068

Unique Gene Pairs

55,489

33,312

38,891

Jaccard Coefficient

0.016

0.036

0.050

S. cerevisiae

KEGG vs WikiPathways

WikiPathways vs YeastCyc

YeastCyc vs KEGG

Overlap Gene Pairs

35

9

419

Unique Gene Pairs

2,909

1,479

3,524

Jaccard Coefficient

0.012

0.006

0.106

M. tuberculosis H37Rv

KEGG vs WikiPathways

WikiPathways vs MTBRvCyc

MTBRvCyc vs KEGG

Overlap Gene Pairs

9

8

358

Unique Gene Pairs

3,819

2,810

5,823

Jaccard Coefficient

0.002

0.003

0.058

  1. Summary of the number of overlap gene pairs, number of unique gene pairs, and Jaccard coefficient among three representative databases.