Skip to main content

Table 4 Summary of overlapping gene pair proportions.

From: IntPath--an integrated pathway gene relationship database for model organisms and important pathogens

H. sapiens KEGG vs WikiPathways WikiPathways vs HumanCyc HumanCyc vs KEGG
Overlap Gene Pairs 1198 468 1,270
Unique Gene Pairs 45,205 23,060 32,987
Jaccard Coefficient 0.026 0.020 0.037
M . m usculus KEGG vs WikiPathways WikiPathways vs MouseCyc MouseCyc vs KEGG
Overlap Gene Pairs 875 1,242 2,068
Unique Gene Pairs 55,489 33,312 38,891
Jaccard Coefficient 0.016 0.036 0.050
S. cerevisiae KEGG vs WikiPathways WikiPathways vs YeastCyc YeastCyc vs KEGG
Overlap Gene Pairs 35 9 419
Unique Gene Pairs 2,909 1,479 3,524
Jaccard Coefficient 0.012 0.006 0.106
M. tuberculosis H37Rv KEGG vs WikiPathways WikiPathways vs MTBRvCyc MTBRvCyc vs KEGG
Overlap Gene Pairs 9 8 358
Unique Gene Pairs 3,819 2,810 5,823
Jaccard Coefficient 0.002 0.003 0.058
  1. Summary of the number of overlap gene pairs, number of unique gene pairs, and Jaccard coefficient among three representative databases.
Back to article page

BMC Systems Biology

ISSN: 1752-0509

Contact us