From: MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences
 | Sep(R, R l ) ± E{std} using 5000 random models | |||
---|---|---|---|---|
TF | w = O (k /3) | w = max{ O (k /3), 3} | w = min{ O (k /2), 5} | w = O (k /2) |
data group 1 (dg1) | ||||
CREB | 0.022 ± 0.047 | 0.022 ± 0.047 | -0.016 ± 0.049 | -0.016 ± 0.049 |
SRF | -0.022 ± 0.034 | -0.022 ± 0.034 | -0.030 ± 0.035 | -0.030 ± 0.035 |
TBP | 0.125 ± 0.020 | 0.128 ± 0.020 | 0.128 ± 0.020 | 0.128 ± 0.020 |
MEF2 | 0.358 ± 0.041 | 0.358 ± 0.041 | 0.367 ± 0.041 | 0.367 ± 0.041 |
MYOD | 0.066 ± 0.037 | -0.089 ± 0.045 | -0.089 ± 0.045 | -0.089 ± 0.045 |
ERE | -0.008 ± 0.028 | -0.008 ± 0.028 | -0.081 ± 0.031 | -0.210 ± 0.038 |
E2F | 0.110 ± 0.027 | 0.110 ± 0.027 | 0.127 ± 0.026 | 0.136 ± 0.026 |
CRP | 0.052 ± 0.028 | 0.052 ± 0.028 | 0.110 ± 0.024 | -0.110 ± 0.039 |
avg | 0.088 ± 0.033 | 0.069 ± 0.034 | 0.065 ± 0.034 | 0.022 ± 0.037 |
data group 2 (dg2) | ||||
dm01g | 0.101 ± 0.035 | 0.101 ± 0.035 | 0.105 ± 0.036 | 0.100 ± 0.037 |
dm04m | 0.053 ± 0.033 | 0.053 ± 0.033 | 0.051 ± 0.035 | 0.051 ± 0.035 |
hm02r | 0.219 ±0.043 | 0.219 ± 0.043 | 0.146 ± 0.050 | 0.146 ± 0.050 |
hm03r | 0.135 ± 0.037 | 0.135 ± 0.037 | 0.146 ± 0.037 | 0.146 ± 0.037 |
hm06g | 0.139 ± 0.051 | 0.062 ± 0.058 | 0.062 ± 0.058 | 0.062 ± 0.058 |
hm08m | 0.084 ± 0.041 | 0.091 ± 0.041 | 0.088 ± 0.042 | 0.088 ± 0.042 |
hm09g | 0.114 ± 0.075 | 0.114 ± 0.075 | 0.141 ± 0.074 | 0.141 ± 0.074 |
hm10m | 0.134 ± 0.038 | 0.134 ± 0.038 | 0.129 ± 0.040 | 0.129 ± 0.040 |
hm11g | 0.168 ± 0.045 | 0.168 ± 0.045 | 0.191 ± 0.044 | 0.191 ± 0.044 |
hm16g | 0.140 ± 0.077 | 0.140 ± 0.077 | 0.007 ± 0.098 | 0.007 ± 0.098 |
hm17g | 0.065 ± 0.045 | 0.065 ± 0.045 | 0.026 ± 0.049 | 0.026 ± 0.049 |
hm20r | 0.322 ± 0.023 | 0.322 ± 0.023 | 0.299 ± 0.024 | 0.299 ± 0.024 |
hm21g | 0.064 ± 0.051 | 0.064 ± 0.051 | 0.060 ± 0.054 | 0.060 ± 0.054 |
hm24m | 0.107 ± 0.042 | 0.107 ± 0.042 | 0.081 ± 0.045 | 0.081 ± 0.045 |
hm26m | 0.265 ± 0.044 | 0.265 ± 0.044 | 0.216 ± 0.049 | 0.216 ± 0.049 |
mus02r | 0.004 ± 0.119 | 0.004 ± 0.119 | -0.273 ± 0.198 | -0.273 ± 0.198 |
mus10g | 0.350 ± 0.056 | 0.354 ± 0.056 | 0.354 ± 0.056 | 0.354 ± 0.056 |
mus11m | 0.340 ± 0.042 | 0.340 ± 0.042 | 0.329 ± 0.043 | 0.329 ± 0.043 |
yst08r | 0.131 ± 0.045 | 0.131 ± 0.045 | 0.118 ± 0.047 | 0.107 ± 0.047 |
yst09g | 0.353 ± 0.056 | 0.353 ± 0.056 | 0.337 ± 0.058 | 0.333 ± 0.059 |
avg | 0.164 ± 0.050 | 0.161 ± 0.050 | 0.131 ± 0.057 | 0.130 ± 0.057 |
data group 3 (dg3) | ||||
CREB | 0.072 ± 0.042 | 0.072 ± 0.042 | 0.049 ± 0.043 | 0.049 ± 0.043 |
SRF | -0.026 ± 0.028 | -0.026 ± 0.028 | -0.032 ± 0.029 | -0.032 ± 0.029 |
TBP | 0.129 ± 0.019 | 0.133 ± 0.019 | 0.133 ± 0.019 | 0.133 ± 0.019 |
MEF2 | 0.372 ± 0.042 | 0.372 ± 0.042 | 0.380 ± 0.042 | 0.380 ± 0.042 |
MYOD | 0.088 ± 0.034 | -0.076 ± 0.042 | -0.076 ± 0.042 | -0.076 ± 0.042 |
avg | 0.127 ± 0.033 | 0.095 ± 0.035 | 0.091 ± 0.035 | 0.091 ± 0.035 |
Result summary: | E{Sep(R, R l )} ± E{std} on each data group | |||
dg 1 | 0.088 ±0.033 | 0.069 ± 0.034 | 0.065 ± 0.034 | 0.022 ± 0.037 |
dg 2 | 0.164 ±0.050 | 0.161 ± 0.050 | 0.131 ± 0.057 | 0.130 ± 0.057 |
dg 3 | 0.127 ±0.033 | 0.095 ± 0.035 | 0.091 ± 0.035 | 0.091 ± 0.035 |
avg | 0.126 ±0.039 | 0.108 ± 0.040 | 0.095 ± 0.042 | 0.081 ± 0.043 |