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Table 5 Recognizability scores for the best candidate motifs

From: MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences

Result details: a 10-run average μ score on each dataset

data group (dg)

TF

MAP

IC

R

R l

 

CREB

0.339

0.433

0.383

0.384

 

SRF

0.582

0.757

0.725

0.721

 

TBP

0.529

0.717

0.750

0.800

 

MEF2

0.362

0.763

0.742

0.757

dg 1

MYOD

0.517

0.265

0.243

0.209

 

ERE

0.512

0.750

0.875

1.000

 

E2F

0.383

0.800

0.800

0.700

 

CRP

1.000

1.000

1.000

1.000

avg

0.528

0.686

0.690

0.696

 

dm01g

0.107

0.195

0.151

0.127

 

dm04m

0.180

0.134

0.219

0.188

 

hm02r

0.159

0.305

0.700

0.617

 

hm03r

0.257

0.179

0.225

0.255

 

hm06g

0.264

0.176

0.255

0.297

 

hm08m

0.341

0.304

0.224

0.320

 

hm09g

0.156

0.299

0.304

0.307

 

hm10m

0.364

0.416

0.489

0.474

dg 2

hm11g

0.275

0.390

0.194

0.192

 

hm16g

0.419

0.540

0.550

0.507

 

hm17g

1.000

1.000

1.000

1.000

 

hm20r

0.456

0.304

0.306

0.390

 

hm21g

0.407

0.450

0.180

0.190

 

hm24m

0.198

0.172

0.263

0.266

 

hm26m

0.297

0.313

0.317

0.169

 

mus02r

0.400

0.393

0.233

0.332

 

mus10g

1.000

0.867

0.900

0.800

 

mus11m

0.254

0.392

0.532

0.558

 

yst08r

0.247

0.239

0.151

0.231

 

yst09g

0.389

0.460

0.344

0.314

avg

0.359

0.376

0.377

0.377

 

CREB

0.512

0.422

0.375

0.540

 

SRF

0.369

0.407

0.373

0.398

dg 3

TBP

0.542

0.875

0.583

0.750

 

MEF2

0.533

1.000

0.467

0.433

 

MYOD

0.488

0.425

0.453

0.400

avg

0.489

0.626

0.450

0.504

Result summary: a 10-run average μ score on each data group

dg 1

0.528

0.686

0.690

0.696

dg 2

0.358

0.376

0.377

0.377

dg 3

0.489

0.626

0.450

0.504

avg{dg1, dg2, dg3}

0.458

0.563

0.506

0.526

avg{dg1, dg2}

0.443

0.531

0.533

0.536

  1. Remark: a higher μ score indicates a better ability of a metric in recognizing the best candidate motif in terms of rank order from a set of putative motifs returned by a tool. MISCORE is found to have convincing recognizability performances that are comparable to IC and remarkably better than MAP score as indicated in the result summary.