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Table 1 Summary of genotyping (GWAS) data and microarray gene expression data.

From: Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer

  GWAS Microarray gene expression
Source CGEMS [24] GEO: GDS2547 [25, 26]
# of features 506,216 SNPs 10,595 genes
# of samples Cases:1146
Controls: 1097
Cases: 64
Controls: 75
Phenotype Prostate cancer Subset 1 (17, normal prostate tissue)
Subset 2 (58, normal prostate adjacent to tumor)
Subset 3 (64, primary prostate tumor)
Platform Illumina HumanHap300 and HumanHap240 Affymetrix Human Genome U95C array
  1. CGEMS: The Cancer Genetic Markers of Susceptibility (CGEMS) project. GEO: Gene Expression Omnibus.