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Table 6 Significant pathways in prostate cancer microarray gene expression data detected by the GSEA method.

From: Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer

Pathway (KEGG ID)

ES

NES

P

FDR

Fc gamma R-mediated phagocytosis (hsa04666)*

0.645

1.809

< 0.001

0.131

Focal adhesion (hsa04510)

0.482

1.658

0.004

0.176

Dilated cardiomyopathy (hsa05414) †

0.672

1.905

0.004

0.101

Hypertrophic cardiomyopathy (HCM) (hsa05410) †

0.619

1.740

0.009

0.122

Regulation of actin cytoskeleton (hsa04810)*

0.464

1.714

0.009

0.128

Leukocyte transendothelial migration (hsa04670)

0.594

1.760

0.011

0.163

Arrhythmogenic right ventricular cardiomyopathy (ARVC) (hsa05412) †

0.663

1.760

0.012

0.123

  1. ES: enrichment score. NES: normalized enrichment score.
  2. *Overlap with the Plink set-based results.
  3. †Overlap with the GenGen results.