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Table 2 Performance comparison on Gavin_2006 with CYC-2008

From: Detection of protein complexes from affinity purification/mass spectrometry data

PPI networks Gavin_2006
Evaluation Metric MCL MCODE CFinder COACH CODEC-w0 CODEC-w1 Our method
Sensitivity 0.721 0.338 0.390 0.596 0.584 0.582 0.434
PPV 0.296 0.342 0.365 0.120 0.511 0.546 0.747
Accuracy 0.462 0.340 0.377 0.268 0.546 0.564 0.570
Complex-wise Homogeneity 0.156 0.123 0.087 0.048 0.234 0.272 0.318
Cluster-wise Homogeneity 0.875 0.748 0.613 0.030 0.086 0.107 0.848
Homogeneity 0.369 0.303 0.231 0.038 0.141 0.171 0.519