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Table 3 Performance comparison on Gavin_2006 with GO-CC

From: Detection of protein complexes from affinity purification/mass spectrometry data

PPI networks Gavin_2006
Evaluation Metric MCL MCODE CFinder COACH CODEC-w0 CODEC-w1 Our method
Sensitivity 0.655 0.333 0.358 0.549 0.524 0.529 0.420
PPV 0.241 0.337 0.335 0.107 0.314 0.405 0.648
Accuracy 0.397 0.335 0.346 0.242 0.406 0.463 0.522
Complex-wise Homogeneity 0.164 0.140 0.087 0.050 0.249 0.288 0.350
Cluster-wise Homogeneity 0.845 0.746 0.536 0.027 0.098 0.123 0.800
Homogeneity 0.373 0.323 0.216 0.036 0.156 0.188 0.529