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Table 4 PerformancecComparison on Krogan_2006 with CYC-2008

From: Detection of protein complexes from affinity purification/mass spectrometry data

PPI networks Krogan_2006
Evaluation Metric MCL MCODE CFinder COACH CODEC-w0 CODEC-w1 Our method
Sensitivity 0.659 0.275 0.346 0.660 0.595 0.562 0.300
PPV 0.140 0.135 0.389 0.076 0399 0.422 0.550
Accuracy 0.304 0.193 0.366 0.224 0.487 0.487 0.406
Complex-wise Homogeneity 0.052 0.036 0.063 0.015 0.232 0.218 0.134
Cluster-wise Homogeneity 0.537 0.474 0.566 0.003 0.024 0.048 0.745
Homogeneity 0.373 0.323 0.216 0.036 0.156 0.188 0.529