From: Detection of protein complexes from affinity purification/mass spectrometry data
PPI networks | Krogan_2006 | ||||||
---|---|---|---|---|---|---|---|
Evaluation Metric | MCL | MCODE | CFinder | COACH | CODEC-w0 | CODEC-w1 | Our method |
Sensitivity | 0.659 | 0.275 | 0.346 | 0.660 | 0.595 | 0.562 | 0.300 |
PPV | 0.140 | 0.135 | 0.389 | 0.076 | 0399 | 0.422 | 0.550 |
Accuracy | 0.304 | 0.193 | 0.366 | 0.224 | 0.487 | 0.487 | 0.406 |
Complex-wise Homogeneity | 0.052 | 0.036 | 0.063 | 0.015 | 0.232 | 0.218 | 0.134 |
Cluster-wise Homogeneity | 0.537 | 0.474 | 0.566 | 0.003 | 0.024 | 0.048 | 0.745 |
Homogeneity | 0.373 | 0.323 | 0.216 | 0.036 | 0.156 | 0.188 | 0.529 |