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Table 5 Performance comparison on Krogan_2006 with GO-CC

From: Detection of protein complexes from affinity purification/mass spectrometry data

PPI networks Krogan_2006
Evaluation Metric MCL MCODE CFinder COACH CODEC-w0 CODEC-w1 Our method
Sensitivity 0.644 0.274 0.340 0.638 0.543 0.517 0.303
PPV 0.102 0.126 0.354 0.060 0.350 0.361 0.443
Accuracy 0.257 0.186 0.347 0.196 0.436 0.432 0.366
Complex-wise Homogeneity 0.049 0.039 0.076 0.015 0.241 0.225 0.138
Cluster-wise Homogeneity 0.450 0.469 0.511 0.002 0.026 0.046 0.729
Homogeneity 0.149 0.136 0.197 0.006 0.079 0.102 0.317