Table 6 Number and average size of predicted clusters from different methods on the two testing PPI networks (exclude singleton clusters)
From: Detection of protein complexes from affinity purification/mass spectrometry data
| Â | MCL | MCODE | CFinder | COACH | CODEC-w0 | CODEC-w1 | Our method |
|---|---|---|---|---|---|---|---|
Gavin_2006 | Â | Â | Â | Â | Â | Â | Â |
No. of clusters | 223 | 100 | 65 | 612 | 1082 | 1005 | 461 |
Ave. size | 11.5 | 12.1 | 16.4 | 78.1 | 17.3 | 13.8 | 5.1 |
Krogan_2006 | Â | Â | Â | Â | Â | Â | Â |
No. of clusters | 379 | 73 | 73 | 1927 | 8348 | 2973 | 588 |
Ave. size | 14.1 | 25.2 | 15.1 | 181.8 | 16.1 | 16.2 | 5.0 |