Skip to main content

Table 7 Specificity/sensitivity/F-measure results on the two testing PPI networks with CYC-2008 and GO-CC benchmark complexes on Gavin_2006

From: Detection of protein complexes from affinity purification/mass spectrometry data

  MCL MCODE CFinder COACH CODEC-w0 CODEC-w1 Our method
CYC_2008        
Specificity 0.859 0.610 0.804 0.252 0.305 0.459 0.889
Sensitivity 1.000 1.000 1.000 1.000 1.000 1.000 1.000
F-Measure 0.924 0.758 0.891 0.403 0.468 0.630 0.941
GO_CC        
Specificity 0.836 0.585 0.761 0.197 0.385 0.533 0.839
Sensitivity 0.939 0.456 0.897 0.963 0.993 0.994 0.963
F-Measure 0.885 0.512 0.824 0.328 0.555 0.694 0.897