Table 8 specificity/sensitivity/F-measure results on the two testing PPI networks with CYC-2008 and GO-CC benchmark complexes on Krogan_2006
From: Detection of protein complexes from affinity purification/mass spectrometry data
| Â | MCL | MCODE | CFinder | COACH | CODEC-w0 | CODEC-w1 | Our method |
|---|---|---|---|---|---|---|---|
CYC_2008 | Â | Â | Â | Â | Â | Â | Â |
Specificity | 0.333 | 0.226 | 0.800 | 0.047 | 0.324 | 0.502 | 0.740 |
Sensitivity | 0.520 | 0.048 | 0.600 | 0.822 | 1.000 | 1.000 | 1.000 |
F-Measure | 0.406 | 0.080 | 0.686 | 0.088 | 0.489 | 0.668 | 0.850 |
GO_CC | Â | Â | Â | Â | Â | Â | Â |
Specificity | 0.265 | 0.231 | 0.739 | 0.026 | 0.298 | 0.443 | 0.729 |
Sensitivity | 0.900 | 0.105 | 0.723 | 0.685 | 0.999 | 0.999 | 0.977 |
F-Measure | 0.409 | 0.145 | 0.731 | 0.051 | 0.458 | 0.614 | 0.835 |