From: Joint estimation of causal effects from observational and intervention gene expression data
Setting | Criterion | MCMC-Mallows | Pinna | IDA (opt) | IDA (pes) |
---|---|---|---|---|---|
AUROC | 0.749 (0.043) | — | 0.76 (0.062) | 0.643 (0.079) | |
AUPRC | 0.638 (0.053) | — | 0.628 (0.078) | 0.527 (0.088) | |
Observation only | Spearman | 0.48 (0.091) | — | 0.491 (0.128) | 0.254 (0.177) |
MSE | 0.056 (0.007) | — | 0.182 (0.054) | 0.126 (0.034) | |
AUROC | 0.948 (0.03) | 0.825 (0.048) | 0.733 (0.068) | 0.67 (0.073) | |
AUPRC | 0.868 (0.042) | 0.737 (0.059) | 0.569 (0.087) | 0.53 (0.091) | |
Mixed | Spearman | 0.696 (0.053) | 0.553 (0.097) | 0.42 (0.14) | 0.318 (0.186) |
MSE | 0.026 (0.012) | 0.104 (0.011) | 0.334 (0.137) | 0.196 (0.067) | |
AUROC | 0.845 (0.059) | 0.795 (0.017) | 0.736 (0.056) | 0.646 (0.085) | |
AUPRC | 0.734 (0.078) | 0.725 (0.038) | 0.588 (0.075) | 0.514 (0.092) | |
Partial KO | Spearman | 0.587 (0.104) | 0.636 (0.034) | 0.449 (0.099) | 0.285 (0.187) |
MSE | 0.035 (0.015) | 0.081 (0.008) | 0.215 (0.066) | 0.146 (0.049) | |
AUROC | 0.959 (0.016) | 0.83 (0.035) | 0.733 (0.068) | 0.67 (0.073) | |
AUPRC | 0.886 (0.028) | 0.725 (0.039) | 0.569 (0.087) | 0.53 (0.091) | |
Multiple KO | Spearman | 0.712 (0.028) | 0.625 (0.058) | 0.42 (0.14) | 0.318 (0.186) |
MSE | 0.015 (0.006) | 0.107 (0.008) | 0.334 (0.137) | 0.196 (0.067) | |
AUROC | 0.932 (0.046) | 0.574 (0.165) | 0.58 (0.145) | 0.562 (0.121) | |
Multiple KO | AUPRC | 0.539 (0.078) | 0.36 (0.105) | 0.353 (0.086) | 0.35 (0.08) |
(3 hidden genes) | Spearman | 0.67 (0.109) | 0.037 (0.372) | 0.076 (0.316) | 0.076 (0.31) |
MSE | 0.044 (0.034) | 0.15 (0.041) | 0.45 (0.225) | 0.294 (0.124) |