From: Joint estimation of causal effects from observational and intervention gene expression data
Setting | Criterion | MCMC-Mallows | Pinna | IDA (opt) | IDA (pes) |
---|---|---|---|---|---|
AUROC | 0.79 (0.041) | — | 0.773 (0.064) | 0.651 (0.083) | |
AUPRC | 0.633 (0.061) | — | 0.577 (0.085) | 0.472 (0.102) | |
Observation only | Spearman | 0.474 (0.094) | — | 0.484 (0.122) | 0.246 (0.17) |
MSE | 0.059 (0.006) | — | 0.193 (0.057) | 0.138 (0.035) | |
AUROC | 0.951 (0.03) | 0.842 (0.051) | 0.746 (0.06) | 0.678 (0.073) | |
AUPRC | 0.841 (0.051) | 0.688 (0.084) | 0.5 (0.081) | 0.465 (0.091) | |
Mixed | Spearman | 0.668 (0.055) | 0.534 (0.097) | 0.409 (0.132) | 0.306 (0.181) |
MSE | 0.048 (0.015) | 0.107 (0.01) | 0.35 (0.131) | 0.211 (0.067) | |
AUROC | 0.871 (0.064) | 0.784 (0.018) | 0.749 (0.068) | 0.655 (0.094) | |
AUPRC | 0.721 (0.089) | 0.663 (0.054) | 0.532 (0.088) | 0.459 (0.115) | |
Partial KO | Spearman | 0.574 (0.106) | 0.606 (0.04) | 0.437 (0.104) | 0.272 (0.185) |
MSE | 0.055 (0.015) | 0.088 (0.007) | 0.228 (0.068) | 0.161 (0.052) | |
AUROC | 0.962 (0.017) | 0.839 (0.032) | 0.746 (0.06) | 0.678 (0.073) | |
AUPRC | 0.864 (0.034) | 0.69 (0.046) | 0.5 (0.081) | 0.465 (0.091) | |
Multiple KO | Spearman | 0.683 (0.033) | 0.614 (0.051) | 0.409 (0.132) | 0.306 (0.181) |
MSE | 0.038 (0.009) | 0.108 (0.008) | 0.35 (0.131) | 0.211 (0.067) | |
AUROC | 0.94 (0.045) | 0.561 (0.189) | 0.576 (0.156) | 0.555 (0.133) | |
Multiple KO | AUPRC | 0.483 (0.085) | 0.288 (0.107) | 0.279 (0.078) | 0.276 (0.073) |
(3 hidden genes) | Spearman | 0.633 (0.106) | 0.048 (0.37) | 0.07 (0.311) | 0.064 (0.305) |
MSE | 0.069 (0.048) | 0.149 (0.032) | 0.454 (0.207) | 0.296 (0.109) |