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Table 3 Synthetic data edge placement results

From: Identification of direction in gene networks from expression and methylation

Method

N

Precision

Null

Recall

Null

Fisher

 

samples

 

prec.

 

recall

p-value

IDEM

100

0.565

0.0039

0.007

4.6e-5

3.6e-28

IDEM

500

0.681

0.0039

0.032

1.8e-4

5.1e-127

IDEM

1000

0.692

0.0039

0.057

3.3e-4

6.1e-226

GENIE3

100

0.130

0.0039

0.002

4.6e-5

9.7e-5

GENIE3

500

0.165

0.0039

0.008

1.8e-4

2.7e-20

GENIE3

1000

0.119

0.0039

0.010

3.3e-4

1.5e-22

  1. The results of the edge placement (EP) benchmark using synthetic data.