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Table 2 Common DNA methylated genes across stages

From: Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma

Stages DNA methylated genes
Number List of genes
Common DNA methylated genes across the three stages 34 AJAP1, ATP8A2, CCDC140, CNTP2, CYYR1, EVX1, FERD3L, FOXG1, GRIK3, GRM6, HAND2, HOXA9, HOXB4, HOXD4, HOXD9, HOXD12, INPP5B, OTX2, KRTAP8-1, MMP26, PHOX2A, PLEKHA6, POU4F2, PRAC, PRKCB, PTGDR, REG3A, SIX6, SLC6A2, SPAG6, TBX20, TLX3, TMEM130, ZNF560
Common DNA methylated genes across Stage I & II 12 ADCY4, BHMT, C12orf34, CDO1, LVRN, LY96, MSC, PCDHGA12, POU3F3, ZNF154, ZNF577, IHH
Common DNA methylated genes across Stage II & III 30 BARHL2, C10orf81, CCDC140, DEFB119, DIO3, FAM135B, FAM83A, GRIK2, HOXA4, HOXD10, HS3ST2, KCNS2, KRTAP15-1, LEP, LHX1, LYPD5, MAGEB6, NEUROG1, NKX6-2, OR5I1, SERPINB5, SPHKAP, TAL1, TBX4, TBX5, TCN1, TMEM132D, VSX1, ZNF454, IGKV7-3
Common hypermethylated genes across Stage I and Stage III 42 AJAP1, ATP8A2, CCDC140, CNTP2, CYYR1, EVX1, FERD3L, FOXG1, FOXI2, GALR1, GAS7, GRIK2, GRM6, HAND2, HLA-G, HOXA7, HOXA9, HOXB4, HOXD4, HOXD8, HOXD9, HOXD12, INPP5B, NID2, NPY, OTX2, PAX7, PHOX2A, PLEKHA6, POU4F2, PRAC, PRKCB, PTGDR, SIX6, SLC6A2, SOX17, SPAG6, TBX20, TLX3, TMEM130, VIPR2, ZNF560
Common hypomethylated genes across Stage I and Stage III 4 CORO6, MMP26, REG3A, KRTAP8-1