From: Precise generation of systems biology models from KEGG pathways
KEGG2SBML | BN++ | KEGGconverter | KGML2BioPAX KGML2SBML | KEGGtranslator | ||
---|---|---|---|---|---|---|
Version | 1.5.0 | 1.1 | n/a | n/a | 1.2 | 2.0 |
Release date | 2008-07-28 | 2009-04-22 | 2009-12-18 | 2010-06-03 | 2011-07-04 | 2012-06-04 |
Authors | Funahashiet al. | Küntzeret al. | Moutseloset al. | Leeet al. | Wrzodeket al. | |
Supported model formats | ||||||
SBML | ✓ | ∘ | ✓ | ✓ | ✓ | ✓ |
BioPAX | - | ✓ | - | ✓ | - | ✓ |
Generic translation features | ||||||
Machine interpretable | ∘ | ✓ | ∘ | ✓ | ✓ | ✓ |
Human interpretable | ✓ | - | ✓ | - | ✓ | ✓ |
Signaling pathways | - | - | - | - | - | ✓ |
Complete | - | ✓ | ✓ | - | ✓ | ✓ |
No duplicate entries | ✓ | ✓ | ✓ | ✓ | - | ✓ |
No duplicate reactions | ✓ | - | ✓ | ✓ | ✓ | ✓ |
Unbundle reactions | ✓ | - | - | - | - | ✓ |
Revision of reactions | ✓ | - | - | - | ✓ | ✓ |
Stoichiometry | - | - | - | - | - | ✓ |
SBML | ||||||
Valid | ✓ | n/a | - | ✓ | ✓ | ✓ |
Level.Version | 1.1 up to 2.3 | n/a | 2.1 | 2.4 | 2.4 | 2.4, 3.1 |
SBO terms | - | n/a | - | - | ✓ | ✓ |
Notes | - | n/a | - | - | ✓ | ✓ |
Annotations | - | n/a | - | - | ✓ | ✓ |
BioPAX | ||||||
Valid | n/a | - | n/a | - | n/a | ✓ |
Level | n/a | 2 | n/a | 2 | n/a | 2, 3 |
Appropriate classes | n/a | ✓ | n/a | - | n/a | ✓ |
Notes | n/a | - | n/a | - | n/a | ✓ |
Annotations | n/a | ✓ | n/a | - | n/a | ✓ |
SM annotations | n/a | - | n/a | - | n/a | ✓ |