Skip to main content

Table 3 BiNoM path analysis algorithms

From: BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

Algorithms Directed Finite
  paths search radius
Shortest paths o o
(Dijkstra’s algorithm)   
Optimal and suboptimal o o
shortest paths   
All non self-intersecting o o
  1. Listing of the different algorithms implemented in BiNoM for path analysis. The “Directed paths search“ toggles the search for directed or undirected paths. The ”Finite radius” option lets the user restrict the search to a given path length, in order to limit the size of the results and computation time.