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Table 3 GAP’s configuration settings

From: Novel semantic similarity measure improves an integrative approach to predicting gene functional associations

  Configuration No.
  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
  Leaves X X X X             
Term Resnik      X X X X         
Sim. Seco          X X X X     
  SD              X X X X
Feature Avg X X    X X    X X    X X   
Sim. Max    X X    X X    X X    X X
Gene Decile-w X   X   X   X   X   X   X   X  
Sim Decile   X   X   X   X   X   X   X   X
  1. For the ease of reference, at any threshold setting, different combinations of term similarity, feature similarity, and gene similarity measures are given specific configuration numbers. “X” identifies the similarity measures selected for each of the configuration numbers. SD stands for specificity-descendant term similarity measure. Decile-w refers to decile-weighted gene similarity measure.