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Table 2 Noise configurations in simulated datasets

From: Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation

Configuration Label σ θ σ ν
1 LL 0.025 0.025
2 LM 0.025 0.050
3 LH 0.025 0.100
4 ML 0.050 0.025
5 MM 0.050 0.050
6 MH 0.050 0.100
7 HL 0.100 0.025
8 HM 0.100 0.050
9 HH 0.100 0.100
  1. Columns σ θ and σ ν show the values of the standard deviations of the Gaussian distributions with μ = 1 from which the biological variances θsyn and θdeg and the measurement error ν were sampled in SysGenSIM. Each configuration is also represented by a 2-character string, indicating the intensity levels (low (L), medium (M), high (H)) of the biological variance (first letter) and of the measurement error (second letter), respectively.