Table 1 Features of available constraints-based programming packages
From: COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Software package | GUI | FBA | FVA | M-models | ME-models | SBML | Strain design | Language |
|---|---|---|---|---|---|---|---|---|
Cell net analyzer | + | + | + | + | Â | + | + | MATLAB |
COBRA toolbox | Â | + | + | + | Â | + | + | MATLAB |
COBRApy | Â | + | + | + | + | + | * | Python |
fasimu | Â | + | + | + | Â | + | Â | bash |
PySCeS-CBM | Â | + | + | + | Â | + | Â | Python |
Raven | + | + | Â | + | Â | + | Â | MATLAB |
Systems biology research tool | Â | + | + | + | Â | Â | Â | Java |