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Table 1 Features of available constraints-based programming packages

From: COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Software package GUI FBA FVA M-models ME-models SBML Strain design Language
Cell net analyzer + + + +   + + MATLAB
COBRA toolbox   + + +   + + MATLAB
COBRApy   + + + + + * Python
fasimu   + + +   +   bash
PySCeS-CBM   + + +   +   Python
Raven + +   +   +   MATLAB
Systems biology research tool   + + +     Java
  1. +: feature is available; *: feature is accessible through the COBRA Toolbox.