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Table 2 Numbers of detected genes by DCglob and by DCloc

From: New network topology approaches reveal differential correlation patterns in breast cancer

Algorithm

Threshold

ER

HER2

  

Genes

FDR

Genes

FDR

DCglob

p<0.1

630

12.1%

804

9.5%

 

p<0.05

420

8.9%

544

6.9%

DCloc

d>0.25

770

12.8%

1027

9.6%

 

d>0.3

185

5.4%

238

4.2%

  1. Number of detected genes after choosing the cutoff points p = 0.1, 0.05 (DCglob) and d = 0.25, 0.3 (DCloc). FDRs were estimated using a repeated random subsampling method.