Table 3 Comparison of top 7 performing alignment strategies of SPIC with the best strategies of existing methods for motif retrieval on Dataset-1.
| Â | Accuracy | ||
|---|---|---|---|
Strategy | ZF PFMs(25) | Non-ZF PFMs(71) | Total(96) |
SPIC/SW(gap open = 1.00) | 0.620 | 0.921 | 0.841 |
SPIC/SW(gap open = 0.75) | 0.613 | 0.918 | 0.837 |
SPIC/SW(gap open = 0.50) | 0.614 | 0.916 | 0.837 |
SPIC/SW(gap open = 1.50) | 0.605 | 0.916 | 0.835 |
SPIC/SW(gap open = 0.25) | 0.606 | 0.915 | 0.835 |
SPIC/SW(ungapped) | 0.610 | 0.916 | 0.836 |
SPIC/NW(gap open = 1.0) | 0.585 | 0.793 | 0.731 |
KFV(4-mer, cosine angle) | 0.600 | 0.915 | 0.833 |
PCC/SWU | 0.600 | 0.887 | 0.813 |
SSD/SW | 0.560 | 0.859 | 0.781 |