Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso

BMC Systems Biology

Table 2 Classification of amino acids

# groups	classification of amino acids
2	MLVICGATSPFYW/DENQRKH
4	MLVIC/GATSP/FYW/DENQRKH
8	MLVIC/GA/TS/P/FYW/DENQ/RK/H
10	MLVI/C/G/A/TS/P/FYW/DENQ/RK/H
15	MLVI/C/G/A/T/S/P/FY/W/D/E/N/Q/RK/H

Classification of amino acids by Murphy et al. [34]. The two groups are classified by the hydrophobic and hydrophilic properties of amino acid side-chains. The group of (FYW) is aromatic hydrophobic, (TS), (DENQ), and (RK) are polar.

ISSN: 1752-0509