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Table 1 Gap penalty of bulge in relationship with gap size and starting position

From: A computational method for predicting regulation of human microRNAs on the influenza virus genome

  

Starting position of bulge (from 5' end of miRNA)

  

1

2

3

4

5

>5

gap size

1

-1

-1

-2

-2

-5

-20

 

2

-1

-1

-2

-2

-5

-20

 

3

-2

-2

-3

-3

-8

-25

 

4

-2

-2

-3

-3

-8

-25

 

>4

-5

-5

-6

-6

-10

-40