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Table 2 AUC for the yeast gold-standard PPI data sets using single GO aspect

From: ppiPre: predicting protein-protein interactions by combining heterogeneous features

  Binary data set Co-complex data set
  BP MF CC BP MF CC
Wang 0.9246 0.7867 0.8696 0.7875 0.7482 0.8994
IntelliGO 0.8932 0.7842 0.7283 0.7882 0.7477 0.8551
TCSS 0.6178 0.6659 0.6628 0.5646 0.7891 0.8896
  1. Tests were performed separately for biological process (BP), molecular function (MF) and cellular component (CC) ontologies in two data sets. We define similarity between two proteins as the maximum similarity found between any two GO terms that annotate them. The best ROC scores for each data set are in bold.