Table 5 Functions provided in ppiPre
From: ppiPre: predicting protein-protein interactions by combining heterogeneous features
Name | Description |
|---|---|
AASim | Computes the Adamic-Adar similarity |
ComputeAllEvidences | Computes biological and topological similarities |
FNPre | Predict false negative interactions using topological similarities |
GOKEGGSims | Computes KEGG-based similarity and GO-based similarities |
IntelliGOGeneSim | Computes IntelliGO semantic similarity |
JaccardSim | Computes the Jaccard similarity |
KEGGSim | Computes KEGG-based similarity |
RASim | Computes the Resource Allocation similarity |
SVMPredict | Trains the SVM classifier, and then predict false interactions |
TCSSGeneSim | Computes TCSS semantic similarity |
TopologicSims | Computes all the three topological similarities |
WangGeneSim | Computes Wang's semantic similarity |