Table 4 Numbers of dictionary entries with pathway keywords and gene/protein names
From: PathNER: a tool for systematic identification of biological pathway mentions in the literature
Database | #Total entries | #Entries with keywords | #Entries with keywords and gene/protein | % with gene/protein in entries with keyword |
|---|---|---|---|---|
INOH | 90 | 55 | 53 | 96.36% |
NetPath | 48 | 48 | 45 | 93.75% |
PID | 1329 | 433 | 280 | 64.67% |
KEGG | 273 | 39 | 22 | 56.41% |
WikiPathways | 376 | 129 | 72 | 55.81% |
Reactome | 1411 | 243 | 134 | 55.14% |
BioCarta | 260 | 117 | 64 | 54.70% |
PO | 1609 | 1556 | 512 | 32.90% |
PharmGKB | 96 | 92 | 17 | 18.48% |
SMPDB | 467 | 215 | 33 | 15.35% |
HumanCyc | 308 | 29 | 3 | 10.34% |
EHMN | 78 | 1 | 0 | 0.00% |