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Table 7 Top 25 detected mentions in the ALZ_ARF_PUBMED corpus

From: PathNER: a tool for systematic identification of biological pathway mentions in the literature

Detected Mention

Freq

In AlzPathway?

Evidence

Alzheimer's disease

1869

N/A

N/A

Disease

1121

N/A

N/A

Parkinson's disease

201

NO

PMID: 12672864

Amyotrophic lateral sclerosis

143

NO

PMID: 1571856

Metabolism

123

N/A

N/A

Apoptosis

120

YES

PMID: 11227497

Oxidative stress

99

YES

PMID: 10681270

Transcription

99

N/A

N/A

Long-term potentiation

98

YES

PMID: 12399581

Gene expression

94

YES

N/A

Proteasome

67

NO

PMID: 10854289

Huntington's disease

59

NO

PMID: 15686606

Cell cycle

56

YES

PMID: 15936057

Methylation

35

NO

PMID: 19606065

Translation

35

N/A

N/A

Acetylation

33

YES

PMID: 19625751

Endocytosis

27

NO

PMID: 16442855

Notch signalling

21

NO

PMID: 19853579

Glucose metabolism

18

NO

PMID: 21971455

Obesity

17

NO

PMID: 19801534

Long-term depression

16

NO

PMID: 21854392

Signal transduction

15

N/A

N/A

Glycolysis

14

NO

PMID: 14718371

Prion diseases

14

NO

PMID: 15190676

Creutzfeldt-Jakob disease

13

NO

PMID: 7904883

  1. *N/A: Not applicable; the last column shows a PMID that provides evidence that a given mention is linked to AZ.