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Table 2 Selected top E. coli five gene pairs predicated using literature data before 2004 and verified by literature data afterwards.

From: A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks

Index

Gene1

Gene2

Dissim Score

p-value

PMIDs

MeSH terms

1

bacA

ybjG

0.073

3.83E-05

15778224, 17660416, 18411271

Polyisoprenyl Phosphates || Bacitracin || Phosphoric Monoester Hydrolases || Fosfomycin || Periplasm

2

nuoA

nuoN

0.075

4.25E-05

15683249, 16645316, 16807239, 17489563

Electron Transport Complex I || NADH Dehydrogenase || Iron-Sulfur Proteins || NADH, NADPH Oxidoreductases || Electron Spin Resonance Spectroscopy

3

ybjG

lpxT

0.098

5.84E-05

15778224, 17660416, 18411271

Polyisoprenyl Phosphates || Bacitracin || Fosfomycin || Phosphoric Monoester Hydrolases || Periplasm

4

hyaB

hybC

0.110

7.53E-05

17668201, 17938909, 18335216

Hydrogenase || Hydrogen || Genetic Enhancement || Formate Dehydrogenases || Paraquat

5

dsdC

sdaA

0.144

1.18E-04

17785472

L-Serine Dehydratase || Serine || Amino Acid Transport Systems || Urinary Tract || Transcription Factors