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Table 2 Numbers of detected significant genes under FDR cut-off = 0.05

From: A novel approach to minimize false discovery rate in genome-wide data analysis

Dataset miFDR SAM BH - t-test Storey - t-test BH - ranksum Storey - ranksum
GDS1517* 610 546 20 29 0 0
GDS2154 684 292 150 300 0 0
GDS2414 322 286 102 115 0 0
GDS2470 104 58 4 4 0 0
GDS2552 787 741 245 508 0 0
GDS2765 177 112 10 20 0 0
GDS2778 734 701 57 108 0 13
GDS3087 74 15 2 4 0 0
GDS3132 453 420 163 205 0 0
GDS3295** 342 267 149 319 0 0
GDS3395 463 425 98 98 210 56
GDS3407*** 283 241 1 1 0 0
GDS3518 450 420 23 43 0 0
GDS3663 419 235 0 0 0 0
  1. Numbers of detected significant genes under FDR cut-off = 0.05. Three out of total 14 datasets have more than two classes. In each of those datasets, we select two classes as the following. *GDS1517: wild type/control (5 samples) versus wild type/low fat, high carbohydrate (5 samples). **GDS3295: GV oocyte/66 weeks (4 samples) versus GV oocyte/6 weeks (4 samples). ***GDS3407: wild type/control (4 samples) versus wild type/PFOA (4 samples).