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Figure 5 | BMC Systems Biology

Figure 5

From: 16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing

Figure 5

Runtime comparison. Computational time taken by LSH-Div, ESPRIT, Mothur and DOTUR to process eight environmental samples in log10 scale. FS312(t) sample is reduced to 4002 sequences and FS396(t) sample is reduced to 3467 sequences. Avg. Time is reported as average computational time taken by each method across eight environmental samples. Mothur and DOTUR are not able to process FS312 and FS319 samples (runtime is shown as 0) due to large number of sequences and memory limitations. The parameter setting used by LSH-Div algorithm to obtain these results is k = 30, w-mer = 3.

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