Identifying protein complexes based on density and modularity in protein-protein interaction network

BMC Systems Biology

Table 3 Comparison of Sensitivity, Specificity, F-score, the number and the percentage of perfect matches of LF-PIN and other algorithms (for S.cerevisiae)

	Number	Perfect match	Sensitivity	Specificity	F-score
LF-PIN	297	28 (9.43%)	0.452	0.630	0.526
CMC	1130	21 (1.86%)	0.576	0.219	0.317
Core-Attachment	1358	31 (2.28%)	0.589	0.174	0.268
CPM	197	11 (5.58%)	0.185	0.376	0.248
DPClus	1200	27 (2.25%)	0.651	0.216	0.324
HC-PIN	265	17 (6.42%)	0.318	0.449	0.373
MCL	929	15 (1.61%)	0.450	0.187	0.264
NFC	518	5 (0.97%)	0.277	0.209	0.238

The table shows the values of Sensitivity, Specificity, and F-score, the numbers and the percentages of perfect matches of LF-PIN, CMC, Core-Attachment, CPM, DPClus, HC-PIN, MCL and NFC in PPI network of S.cerevisiae. In column of 'Perfect match', the integers out of brackets are the numbers of perfect matches, the percentages in brackets are the percentages of perfect matches.

ISSN: 1752-0509