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Table 1 Reactions and kinetic rates of the simplified stochastic model.

From: Stochastic modelling of biochemical systems of multi-step reactions using a simplified two-variable model

 

Reaction

Rate constant s i

Comment

S 1

DNA → A

s 1

transcription

S 2

A → B

s 2

transport

S 3

B → BC 1

s 3

full-length 70A-60A

S 4

BC 1 → BC 2

s 4

full-length 60A-50A

S 5

BC 2 → BC 3

s 5

full-length 50A-40A

S 6

BC 3 → BC 4

s 6

full-length 40A-30A

S 7

BC 4 → BC 5

s 7

full-length 30A-20A

S 8

BC 5 → BC 6

s 8

full-length 20A-10A

S 9

BC 6 → BC 7

s 9

full-length 10A-0A

S 10

BC 7 → FG

s 10

fragment production

  1. The rate constants s i are in the unit of 1/sec.