A scalable method for discovering significant subnetworks

BMC Systems Biology

Table 1 An overview of the real data sets used in the experiments.

Data set	Number of Networks	Entire Data set		Template Graph
		Nodes	Edges	Nodes	Edges
Eukaryote-G	145	45,315	78,499	1,413	1,541
Prokaryote-G	1,486	393,681	616,546	1,413	1,676
Eukaryote-AAG	145	2,048	2,951	43	54
Prokaryote-AAG	1,442	20,692	27,334	43	79
Eukaryote-P	145	2,942	5,757	63	103
Prokaryote-P	1,486	31,130	60,802	63	114
HTRN	41	21,377	574,122	538	47,945

Suffixes G, AAG and P stand for Global, Alanine, Aspartate and Glutamate and Pyrimidine, respectively. HTRN denotes Human Transcription Regulatory Networks [15].

ISSN: 1752-0509