From: A novel two-layer SVM model in miRNA Drosha processing site detection

ID | Name | Description |
---|---|---|

1
| Length | The length of the sequence |

2
| Loop_length | The loop size of hairpin structure |

3
| Stem_length | The stem length of hairpin structure |

4
| Pair | The number of base pairs in folding result |

5
| Pair_frac | The fraction of paired base in sequence |

7
| Insert_count | The number of bulges in the folding structure output by RNAfold |

6
| Insert_frac | The average length of bulges in sequence |

8
| Insert_count_frac | The ratio between the nucleotides in bulges and those in the sequence |

9
| Mfe | The minimal free energy output by RNAfold |

10
| Ensemble_fe | The free energy of the thermodynamic ensemble |

11
| Ensemble_fq | The probability of this single structure in the Boltzmann weighted ensemble of all structures. |

12
| Ensemble_div | The ensemble diversity is the average base-pair distance between all structures in the thermodynamic ensemble. |