From: A novel two-layer SVM model in miRNA Drosha processing site detection
ID | Name | Description |
---|---|---|
1 | Length | The length of the sequence |
2 | Loop_length | The loop size of hairpin structure |
3 | Stem_length | The stem length of hairpin structure |
4 | Pair | The number of base pairs in folding result |
5 | Pair_frac | The fraction of paired base in sequence |
7 | Insert_count | The number of bulges in the folding structure output by RNAfold |
6 | Insert_frac | The average length of bulges in sequence |
8 | Insert_count_frac | The ratio between the nucleotides in bulges and those in the sequence |
9 | Mfe | The minimal free energy output by RNAfold |
10 | Ensemble_fe | The free energy of the thermodynamic ensemble |
11 | Ensemble_fq | The probability of this single structure in the Boltzmann weighted ensemble of all structures. |
12 | Ensemble_div | The ensemble diversity is the average base-pair distance between all structures in the thermodynamic ensemble. |