Table 1 Novel alternative splicing isoform candidate biomarkers for breast cancer in plasma
Peptide sequence | gene | transcript | mode | type | pvalue | h | c | Peptide |
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Â | Â | Â | Atlas |
SWGGRPQRMGAVPGGVWSAVLMGGAR | ERBB2 | ENST00000269571 | i18 | INTRON_AS | 9.48E-05 | 4 | 20 | No |
QTPKHISESLGAEVDPDMSWSSSLATPPTLSSTVLI(G)LLHSSVK | BRCA2 | ENST00000380152 | E7_E11 | E_E_AS | 8.57E-04 | 1 | 12 | No |
SLWLQSQPHFCCFWLTVTFPPPLQ^THRELAQSSHAQR | NTRK3 | ENST00000317501 | i2_E3 | i_E_AS | 1.22E-02 | 2 | 10 | No |
WGLLLALLPPGAASTQ(A)VWTWMTR | ERBB2 | ENST00000269571 | E1_E16 | E_E_AS | 1.22E-02 | 2 | 10 | No |
LSWNHVARALTLTQSLVSSVTSGK | NTRK3 | ENST00000559764 | i2 | INTRON_AS | 1.39E-02 | 4 | 13 | No |
CQ(G)EPYHDIRFNLMAVVPDR | BAP1 | ENST00000460680 | E3_E9 | E_E_AS | 3.33E-02 | 9 | 18 | No |
QVLP^VGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPK | PBRM1 | ENST00000296302 | E9_E29 | E_E_AS | 3.89E-02 | 6 | 14 | No |
DHLACW^DYDLCITCYNTKNHDHK | EP300 | ENST00000263253 | E22_E31 | E_E_AS | 4.50E-02 | 4 | 11 | No |