PPSampler2: Predicting protein complexes more accurately and efficiently by sampling

BMC Systems Biology

Table 1 Default parameter values of PPSampler2.

Parameter	notation & value
Temperature	T = 10⁻⁹
number of iterations	L = 2 × 10⁶
maximum cluster size	N = 100
probability of making a new single cluster	β = 0.01
parameters of g₂	γ = 2
	$σ_{2, i}^{2} = 1000 \times 1 . 1^{- i}$
parameters of g₃	λ = 2000
	$σ_{3}^{2} = 1 0^{6}$

ISSN: 1752-0509