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Table 1 AUC score on pair-wise cross validation experiments

From: Scalable prediction of compound-protein interactions using minwise hashing

Ratio

Number

MH-L1SVM

MH-L2SVM

L1SVM

L2SVM

1

600, 404

0.78 ± 2.31 × 10-6

0.79 ± 2.31 × 10-6

0.79 ± 3.22 × 10-6

0.80 ± 4.97 × 10-6

5

1, 801, 212

0.79 ± 7.23 × 10-7

0.80 ± 8.30 × 10-7

0.81 ± 2.04 × 10-7

0.81 ± 2.04 × 10-7

10

3, 302, 222

0.79 ± 1.84 × 10-6

0.80 ± 1.35 × 10-6

0.81 ± 5.34 × 10-7

0.81 ± 4.31 × 10-7

25

7, 805, 252

0.79 ± 2.89 × 10-7

0.80 ± 6.28 × 10-8

0.81 ± 9.87 × 10-8

0.81 ± 1.30 × 10-7

50

15, 310, 302

0.79 ± 3.21 × 10-7

0.81 ± 3.79 × 10-7

0.81 ± 3.40 × 10-8

0.81 ± 1.72 × 10-7

100

30, 320, 402

0.79 ± 2.38 × 10-7

0.81 ± 1.49 × 10-7

-

0.81 ± 2.43 × 10-7

250

75, 350, 702

0.79 ± 2.91 × 10-7

0.81 ± 2.42 × 10-7

-

0.81 ± 3.66 × 10-7

  1. The number of negative examples is varied from the same number of positive examples to the number of negative examples 250 times larger than the number of all positive examples.