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Table 1 Connections of the E. coli contigs by OMACC. For contigs, the number, "+/-", and ":" stand for the contig index, strand, and connections, respectively.

From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly

Neighboring contigs

Gap size (bp)

Best contig path

Contig path length (bp)

Length difference

Correct

006+,091+

2326

006+:116+:091+

2327

1

1

004+,086+

10658

004+:005+:086+

10660

2

1

032-,046+

6058

032-:047+:046+

6056

2

1

044-,017+

11342

044-:047+:017+

11340

2

1

013+,061+

23861

013+:011-:053+:061+

23864

3

1

010+,069-

4003

010+:078+:069-

4007

4

1

050-,059-

17496

050-:116-:059-

17500

4

1

012-,036-

20629

012-:011+:036-

20635

6

1

086+,054-

6739

086+:117-:054-

6745

6

1

017+,012-

10239

017+:018+:012-

10246

7

1

029-,010+

38377

029-:015+:056+:116-:010+

38384

7

1

057-,079-

29696

057-:053-:011+:075+:111-:080-:079-

29703

7

1

023+,022+

40884

023+:117+:022+

40893

9

1

022+,002+

49821

022+:116-:068-:011-:053+:081-:116-:002+

49831

10

1

048+,044-

27181

048+:028+:044-

27191

10

1

002+,050-

25463

002+:015+:050-

25475

12

1

108+,062-

48785

108+:117-:062-

48800

15

1

062-,016+

11600

062-:015-:016+

11238

362

1

091+,067-

24244

091+:053-:011+:067-

23876

368

1

076+,029-

10053

076+:028+:029-

9285

768

1

001+,023+

29005

001+:117+:023+

29788

783

0*

016+,033-

8649

016+:083+:033-

6842

1807

0*

  1. The last column indicates whether the best contig path matches the true contig order in Table S1, Additional file 1.
  2. *True contig path not in the contig graph.