Table 4 Connections of GI1 contigs by FINISH. Note that although FINISH does not rescale optical map, the rescaled gap sizes are shown here.
From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly
Neighboring contigs | Gap size (bp) | Best contig path | Contig path length (bp) | Length difference | Consistent |
|---|---|---|---|---|---|
019-,034+ | 24373 | 019-:200-:034+ | 24362 | 11 | 1 |
017+,043- | 9345 | 017+:176-:043- | 9365 | 20 | 1 |
018-,033- | 21609 | 018-:262+:181-:259-:033- | 21547 | 62 | 1 |
034+,007+ | 12182 | 034+:175-:007+ | 12096 | 86 | 1 |
003+,038+ | 16008 | 003+:227-:205+:038+ | 16095 | 87 | 1 |
036+,013- | 17106 | 036+:149-:013- | 17269 | 163 | 1 |
039-,057- | 16268 | 039-:175-:057- | 16105 | 163 | 1 |
029-,070- | 8250 | 029-:179-:070- | 7930 | 320 | 1 |
035+,006- | 67333 | 035+:261-:173-:099-:182+:006- | 67009 | 324 | 1 |
023+,010+ | 19779 | 023+:159+:010+ | 20127 | 348 | 1 |
037+,025+ | 18649 | 037+:176+:025+ | 18218 | 431 | 1 |
043-,056+ | 10828 | 043-:240+:056+ | 10288 | 540 | 1 |
004-,035+ | 24146 | 004-:175-:035+ | 23260 | 886 | 1 |
010+,002+ | 6451 | 010+:245+:002+** | 5556 | 895 | 1 |
044+,020- | 44467 | 044+:168+:020- | 43369 | 1098 | 1 |
026+,044+ | 17568 | 026+:199+:044+** | 15881 | 1687 | 1 |
027-,016- | 75414 | 027-:196+:103-:126-:063-:016-** | 72109 | 3305 | 0 |
005+,008-* | 10972 | 005+:175+:008- | 17552 | 6580 | 0 |
041+,104+ | 27829 | 041+:175-:104+** | 20998 | 6831 | 0 |
084+,071+ | 40296 | 084+:175+:071+** | 15449 | 24847 | 0 |
030-,132+* | 2838 | 030-:227-:205+:064+:159+:053-:175-:065-:132+ | 109213 | 106375 | 0 |
046-,119+* | 23104 | 046-:230-:009-:154+:139-:101+:186-:105+:126-:048+:175+:053+:159-:064-:205-:227+:119+ | 322943 | 299839 | 0 |