From: iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data
Tool | Algorithm | Detectable SV types | Simulation 30× CPU time, max. memory size | NA12878 45× CPU time, max. memory size |
---|---|---|---|---|
BD | RP | DEL, INS, INV, TRA | 1.6h, 0.3Gb | 2.1h, 0.5Gb |
Delly | RP, RD, SR | DEL, INV, DUP, TRA | 1.3h, 0.5Gb | 24h, 9Gb |
Pindel | SR | DEL, INS, INV, DUP, TRA | 19h, 3Gb | 37h, 3Gb |
HC | AS | DEL, INS, other | 68h, *9Gb | 180h, *9Gb |