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Figure 1 | BMC Systems Biology

Figure 1

From: Global dynamic optimization approach to predict activation in metabolic pathways

Figure 1

Three-step linear pathway with mass action kinetics. A) Schematic representation of the three-step linear pathway. The pathway converts the substrate (S 1) into the product (S 4) using three steps, each one catalyzed by a specific enzyme (e i ). B) Metabolite dynamics and enzyme profiles that minimize the time needed to reach a certain amount of product with buffered concentration of substrate (LPN3B) as presented in Equation (10). C) Pareto front obtained for the minimization of time needed to reach a certain amount of product and the intermediates concentrations as shown in Equation (15). D) Enzyme profiles for the selected points of the Pareto front. Control variables have been approximated using ρ=120 steps with fixed duration. Metabolites and enzymes are expressed in concentration units and time in seconds (s).

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