Table 1 Size information of detected paths and combined network in each comparison
Comparison (percentage of oxygen in the bioreactor inlet gas) | # PPI edges | # Metabolic edges | % PPI edges | % metabolic edges | # nodes | # paths |
|---|---|---|---|---|---|---|
2.8% vs. 0.5% O2, down, a = 0 (only transcription data) | 20 | 3 | 87 | 13 | 12 | 12 |
2.8% vs. 0.5% O2, down, a = 0.5 (both transcription and flux data) | 14 | 17 | 45 | 55 | 23 | 27 |
2.8% vs. 0.5% O2, down, a = 1 (only flux data) | 14 | 14 | 50 | 50 | 14 | 23 |
2.8% vs. 0.5% O2, up, a = 0 (only transcription data) | 4 | 39 | 9 | 91 | 29 | 23 |
2.8% vs. 0.5% O2, up, a = 0.5 (both transcription and flux data) | 4 | 32 | 11 | 89 | 30 | 31 |
2.8% vs. 0.5% O2, up, a = 1 (only flux data) | 1 | 25 | 4 | 96 | 16 | 15 |
20.9% vs. 2.8% O2, down, a = 0 (only transcription data) | 20 | 17 | 54 | 46 | 27 | 18 |
20.9% vs. 2.8% O2, down, a = 0.5 (both transcription and flux data) | 3 | 17 | 15 | 85 | 12 | 13 |
20.9% vs. 2.8% O2, down, a = 1 (only flux data) | 1 | 17 | 6 | 94 | 17 | 18 |
20.9% vs. 2.8% O2, up, a = 0 (only transcription data) | 15 | 51 | 23 | 77 | 42 | 42 |
20.9% vs. 2.8% O2, up, a = 0.5 (both transcription and flux data) | 2 | 23 | 8 | 92 | 21 | 13 |
20.9% vs. 2.8% O2, up, a = 1 (only flux data) | 35 | 42 | 45 | 55 | 43 | 64 |