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Table 2 Regulation of AP1, STAT1, STAT3, and NFKB expression by OVOLS

From: A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial – mesenchymal cell reprogramming and cancer progression

   

BC fold change

PC fold change

 

Gene

Expression level

OVOL1

OVOL2

OVOL1&2

Up/Down switch

OVOL1

OVOL2

OVOL1&2

Up/Down switch

AP1

FOS (c- Fos)

Gene

1.4

1.4

1.4

 

1.0

0.8

1.0

 

FOSB

Gene

1.0

2.1

1.1

Up

0.7

0.5

0.4

Down

 

NM _006732

2.6

0.0

0.0

Switch

10.0

10.0

10.0

Switch

 

NM _001114171

0.9

2.3

1.1

0.7

0.5

0.4

FOSL1 (Fra- 1)

Gene

0.9

0.9

0.8

 

1.1

1.0

0.7

 

FOSL2 (Fra- 2)

Gene

0.7

0.7

0.6

Down

0.8

1.2

1.1

 

JUN (c- Jun)

Gene

1.0

0.9

0.8

 

0.5

0.5

0.5

Down

JUNB

Gene

1.5

2.2

2.1

Up

1.2

1.9

1.4

Up

JUND

Gene

1.1

1.1

1.3

 

1.2

1.6

1.2

Up

STAT

STAT1

Gene

1.1

1.3

1.0

 

1.0

1.4

2.0

Up

 

NM _007315

1.1

1.3

1.0

 

1.1

1.4

1.9

Up

 

NM _139266

1.2

1.3

1.1

 

0.8

1.7

2.2

Up

STAT3

Gene

0.9

1.2

0.9

 

0.0

0.4

6.3

Up/ down

 

NM _139276

0.5

1.6

0.9

Up/ down

0.0

0.4

0.0

Switch

 

NM _003150

0.8

1.2

0.9

 

0.0

1.0

10.0

 

NM _213662

1.0

1.2

0.9

 

0.1

1.2

8.6

Up/ down

NFKB

NFKB1 (NFkB1)

Gene

1.0

1.3

1.2

 

1.0

1.1

1.0

 
 

NM _003998

1.0

1.3

1.2

 

1.3

1.1

1.2

 
 

NM _001165412

1.0

1.2

1.2

 

0.8

1.0

0.9

 

NFKB2 (NFkB2)

Gene

0.9

1.5

1.2

Up

1.4

1.7

0.8

Up /down

 

NM _001077494

0.9

1.5

1.0

Up

1.9

3.8

0.8

Up

 

NM _002502

0.7

1.6

0.9

Up

1.3

1.9

0.7

Up

 

NM _001261403

0.9

1.4

0.9

 

1.4

1.4

0.8

 

REL (c- Rel)

Gene

1.2

1.3

1.1

 

1.6

2.2

1.6

Up

RELA

Gene

1.0

1.1

1.1

 

0.9

0.9

0.8

 
 

NM _021975

1.0

1.0

1.0

 

1.0

1.0

1.0

 
 

NM _001145138

1.0

1.1

1.1

 

0.9

0.9

0.8

 

RELB

Gene

0.8

1.5

1.1

Up

1.3

2.4

1.0

Up

  1. We assessed the effects of the OVOLs on expression of AP1, STAT1, STAT3, and NFKB based on our RNA-Seq data for both BC and PC. We looked for up-regulation (at least one observation of Fold Change ≥ 1.5), down-regulation (at least one observation of FC ≤ 0.67), or isoform switching (switch). Within the AP1 (FOS/JUN) group, the FOS genes are regulated in both BC and PC, at both the gene and isoform levels (e.g. FOSB). The individual members of the JUN family are regulated at the gene level, similar to the way isoform switching is used in the FOS group. Within the STAT group (Stat1/Stat3), isoform level regulation is employed in BC while both isoform switching and gene level regulation are employed in PC. Within the NFKB group, gene level regulation is employed.