BMC Systems Biology

Table 2 Predicted gene spatial patterns based on the Markov spatial prediction model for 36 genes from averages with 1000 random initial patterns

From: Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns

Gene	Predicted pattern	Prior pattern
‘bix1.2’	‘d’	‘b’
‘bmp4’	‘v’	‘v’
‘ctnnb1’	‘v’	‘d’
‘foxa1’	‘u’	‘m’
‘foxa2’	‘v’	‘m’
‘foxa4a’	‘d’	‘b’
‘foxh1’	‘u’	‘u’
‘foxh1.2’	‘v’	[ ]
‘frzb’	‘d’	‘d’
‘gata4’	‘d’	‘m’
‘gata5’	‘u’	‘m’
‘gata6’	‘v’	‘m’
‘gsc’	‘d’	‘d’
‘hhex’	‘u’	‘d’
‘hnf1b’	‘u’	[ ]
‘lhx1’	‘u’	‘d’
‘mespb’	‘v’	[ ]
‘mix1’	‘u’	‘u’
‘mixer’	‘u’	‘m’
‘msx1’	‘v’	‘v’
‘myc’	‘v’	[ ]
‘myf5’	‘u’	[ ]
‘myod1’	‘u’	[ ]
‘nodal3’	‘u’	‘d’
‘nodal6’	‘u’	‘m’
‘otx2’	‘d’	‘d’
‘sox17a’	‘u’	‘m’
‘sox17b.1’	‘u’	‘m’
‘sox21’	‘v’	[ ]
‘Sox7’	‘v’	[ ]
‘t’	‘v’	‘b’
‘vegt’	‘u’	‘u’
‘ventx1.2’	‘v’	‘v’
‘ventx2.2’	‘v’	‘v’
‘wnt11’	‘b’	‘b’
‘xbp1’	‘u’	‘b’

‘d’, ‘v’, ‘b’, ‘u’, ‘m’ stand for dorsal, ventral, both dorsal and ventral, uniform and middle (vegetal) patterns, respectively. ‘[]’ represents unknown patterns.

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