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Table 2 Number of reactions and genes lost and gained in comparison to i MR1_799

From: Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

  i MR4_812 i W3181_789 i OS217_672 Core
Reactions lost 11 33 139 262
Reactions gained 64 18 71 2a
Genes lost 49 75 198 251
Genes gained 62 65 71 4b
  1. aThe two unique reactions in the Core model with not in i MR1_799 are the lipopolysaccharide synthesis reaction and the biomass reaction.
  2. bThe four genes in the Core model that are not in i MR1_799 are defined as isozymes for the glutamate-5-semialdehyde dehydrogenase (G5SD), acetylornithine deacetylase (ACODA), inorganic diphosphatase (PPA), and sulfate transport (SO4t2) reactions since some Shewanella strains have different non-orthologous genes that catalyze these reactions.