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Table 2 Number of reactions and genes lost and gained in comparison to i MR1_799

From: Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

 

i MR4_812

i W3181_789

i OS217_672

Core

Reactions lost

11

33

139

262

Reactions gained

64

18

71

2a

Genes lost

49

75

198

251

Genes gained

62

65

71

4b

  1. aThe two unique reactions in the Core model with not in i MR1_799 are the lipopolysaccharide synthesis reaction and the biomass reaction.
  2. bThe four genes in the Core model that are not in i MR1_799 are defined as isozymes for the glutamate-5-semialdehyde dehydrogenase (G5SD), acetylornithine deacetylase (ACODA), inorganic diphosphatase (PPA), and sulfate transport (SO4t2) reactions since some Shewanella strains have different non-orthologous genes that catalyze these reactions.