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Table 3 Benchmarking our method’s performance with the IRMA network

From: An algebra-based method for inferring gene regulatory networks

  a) Our algorithm b) TD ARACNE c) TSNI d) Porrecaet al. e) Zouet al.
Switch ON network      
PPV 0.78 0.71 0.80 1 N/A
Recall 0.88 0.67 0.50 0.63 N/A
Switch OFF network      
PPV 0.63 0.37 0.60 1 .8
Recall 0.63 0.60 0.38 0.63 .5
  1. In a) the results from our algorithm; in b) the results in [64] which outperforms the standard ARACNE method reported in [36]; in c) TSNI as reported in [36]; in d) the results reported in [6] after using time series and product synthesis rates and finally, in e) the results reported in [65].