An algebra-based method for inferring gene regulatory networks

BMC Systems Biology

Table 3 Benchmarking our method’s performance with the IRMA network

	a) Our algorithm	b) TD ARACNE	c) TSNI	d) Porrecaet al.	e) Zouet al.
Switch ON network
PPV	0.78	0.71	0.80	1	N/A
Recall	0.88	0.67	0.50	0.63	N/A
Switch OFF network
PPV	0.63	0.37	0.60	1	.8
Recall	0.63	0.60	0.38	0.63	.5

In a) the results from our algorithm; in b) the results in [64] which outperforms the standard ARACNE method reported in [36]; in c) TSNI as reported in [36]; in d) the results reported in [6] after using time series and product synthesis rates and finally, in e) the results reported in [65].

ISSN: 1752-0509