Statistics | Feist et al.[5] | Orth et al.[6] | EcoCyc–18.0–GEM |
|---|
| | 2007 | 2011 | |
|---|
# Genes | 1260 | 1366 | 1445 |
# Unique reactions | 1721 | 1863 | 2286 |
# Unique metabolites | 1039 | 1136 | 1453 |
Gene knockout accuracy | 91.4% | 91.3% | 95.2% |
# PM growth conditions | 170 | – | 431 |
PM growth condition | 75.9% | – | 80.7% |
accuracy | | | |
# biomass metabolites | 65 | 72 | 108 |
- Gene knockout prediction accuracy represents simulated growth on glucose minimal media under aerobic conditions. Reaction and metabolite counts represent reactions found in the cytosol and periplasm, since EcoCyc–18.0–GEM does not cover porin-mediated diffusion of metabolites into the periplasmic space.
